Flywheel + BIDS Resources

  • Updated

Logo-Color-Dark-Text__2_.png + BIDS Resources

How to start?

If you are new to the BIDS standard, we strongly recommend reading the Common Principles of the Brain Imaging Data Structure (BIDS) specification. It is also advised to reference the BIDS specification’s relevant sections when curating your dataset to the BIDS standard. For example, if you have diffusion imaging data, reference that section. If you prefer, you can also download a PDF of the BIDS specification here. 

Once you have a handle on the BIDS specification, we recommend starting with the Flywheel Webinars and continuing from there depending on your needs (e.g., how do I export my data in BIDS format?). 

All Flywheel + BIDS resources are listed below

Flywheel Webinars

  1. OHBM 2020: Automating BIDS Workflow with Flywheel - video
  2. Flywheel Webinar Series: BIDS Templating - video & notebook
    • Also, stay tuned in for Upcoming Webinars, some of which cover BIDS-related topics.

Flywheel Tutorials

  1. BIDS Templating Overview - notebook

Flywheel Documentation

  1. BIDS overview
  2. How does the template engine work?
  3. The BIDS template file
  4. BIDS curation gear
  5. BIDS tools
  6. BIDS import
  7. How do I name scan acquisitions so they can be in BIDS format in Flywheel?
  8. How do I have BIDS ignore certain images
  9. How to import existing BIDS data
  10. BIDS export