Use the Include/exclude settings to filter out files based on file type or based on directory name.
##### # Template Settings ##### template: - pattern: "{subject}" - pattern: "{session}" - pattern: "{acquisition}" name: scan: dicom #### # De-identification settings #### name: Profile1 dicom: # Date-increment controls how many days to offset each date field # where the increment-date (shown below) is configured. #Positive values will result in later dates, negative # values will result in earlier dates. date-increment: -17 # patient-age-from-birthdate sets the DICOM header as a 3-digit value with a suffix # be 091D, and that same age in months would be 003M. By default, if # the age fits in days, then days will be used, # otherwise if it fits in months, then months # will be used, otherwise years will be used patient-age-from-birthdate: true # all data elements not defined in fields section of the profile will be removed. # If any field references a nested element in a sequence the whole sequence element # will be kept. remove-undefined: true # Set patient age units as Years. Other options include months (M) and days (D) patient-age-units: Y # The following are field transformations. # Remove, replace-with, increment-date, hash, and hashuid can be used with any DICOM # field. Replace name with the DICOM field "keyword" by the DICOM standard fields: # Use remove Remove a dicom field Removes the field from the DICOM entirely. # If removal is not supported then this field will be blank. # This example removes PatientID. - name: PatientID replace-with: REDACTED # Replace a dicom field with the value provided. # This example replaces “StationName” with "XXXX" in Flywheel - name: StationName replace-with: XXXX # Offsets the date by the number of days defined in # the date-increment setting above, preserving the time # and timezone. In this example, StudyDate appears as 17 days earlier - name: StudyDate increment-date: true # You can refer to fields by their DICOM tag or keyword # Applies one-way hash to a unique string - name: (0008,0050) hash: true # Replaces a UID field with a hashed version of that # field. The first four nodes (prefix) and last node # (suffix) will be preserved, with the middle being # replaced by the hashed value - name: ConcatenationUID hashuid: true # The fields below are listed so that they are not removed as part of the # remove-undefined setting above. - name: SeriesInstanceUID - name: Modality - name: SeriesNumber - name: ScheduledProcedureStepID - name: RequestedProcedureID - name: StudyTime - name: StudyID - name: SeriesNumber - name: PatientID - name: StudyInstanceUID - name: ProtocolName - name: AcquisitionDate increment-date: true - name: AcquisitionDateTime - name: AcquisitionTime - name: SeriesDate increment-date: true - name: SeriesTime #### # Include/Exclude Settings #### # Flywheel uploads only the new data and does not upload duplicates. # all duplicates are noted in the ingest audit log attached to the project detect-duplicates: true # Use regex to indicate file types to exclude from upload exclude: - "*.txt" - "*.xml" # Use regex to indicate directories to include in upload include-dirs: - "*-DCM"
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