Admin Guide
How-to guides for administering Flywheel
Discovery
Signing in
Setting up Flywheel
- Create a group and project
- Session Templates
- Create a new user
- User Roles and Permissions
- Create custom roles
- Project Template
Creating and managing projects
- Create a project
- Roles and permissions
- Data Views
- Webinar series: Intro to Flywheel
- Add and edit custom metadata
- File versioning
Deidentification
- De-Identification (de-id) overview
- Create a de-id profile
- De-id profile transformation reference guide
- Test your de-id profile using the fw deid command
- Enable a de-id profile for a project, group, or site
- How to de-identify DICOM files using the DICOM uploader
Viewing images
Adding data
- Importing data overview
- Adding Data
- Capturing data directly from MR Scanner
- Best Practices: Naming acquisitions for automated classification
- How the DICOM Connector uploads an image
- Upload DICOMs via Web UI
Create a template for uploading data
Search
- Find your data in Flywheel
- Basic search
- Advanced Search
- Search Example: Searching for an Analysis
- Searching Custom Metadata Fields
- Flywheel Webinar: FlyQL and Advanced Searching in the SDK
Monitoring and reporting
BIDS resources
- Flywheel + BIDS: how to start
- BIDS Study Design Spreadsheet
- BIDS curation tutorial part 1: preparing data
- BIDS curation tutorial part 2: running the BIDS Curation gear
- BIDS curation tutorial part 3: troubleshooting and debugging
- BIDS curation tutorial part 4: interpreting the curation report
Advanced config
Gears
- Setting Gear Access
- Flywheel Gears
- Run a Gear in UI
- Dcm2niix troubleshooting
- How to download analysis outputs using the Flywheel UI and SDK
- Delete gears
Resources
- DICOM conformance statement
- Grant resources
- How do I see all of my support tickets?
- Minumum required DICOM tags for functionality
- OHBM 2020: Data Curation and Machine Learning Presentation
- OHBM 2020: Open science, reuse, and reproducibility
Downloading data
- Downloading sessions or acquisitions from the Web UI
- Downloading an entire project from the Web UI
- Downloading a file from the Web UI
- How to unzip dcm.zip in a downloaded Flywheel project
- Downloaded files with .MISSING extension
- Downloading Data with the CLI
Command-Line Interface (CLI)
- Setting up S3 Credentials for Ingest
- How to find permissions for groups and navigate Flywheel hierarchy using CLI
- Installing the Flywheel Command–Line Interface (CLI)
- Webinar series: Introduction to the Flywheel CLI
- Command-Line Interface Overview
- CLI command reference: Ingest dicom