Tags
Following is a list of relevant tags:
- Add Users
- Adding Institutional Collaborators
- Create Custom Roles
- ORCID Account Configuration
- Setting Gear Access
- API Access Controls for Devices
- AWS S3 Credentials
- Access Logs
- Add Users
- Adding Institutional Collaborators
- Admin Guide
- Audit Log
- Backing up Data
- Cluster Ingest
- Create Custom Roles
- Create a De-ID Profile
- Create a Group and Project
- Create a Project
- Creating API Keys
- De-ID Profile Transformation Reference Guide
- De-Identification Profiles
- Delete Gears
- Delete Users
- Detecting Duplicate Files with fw ingest
- Devices Overview
- Enable a De-ID Profile for a Project, Group, or Site
- Extension Applications Setup
- Gear Menu Organization
- Gear Permissions
- Gear Rule Templates
- How to De-identify DICOM Files Using the DICOM Uploader
- How to De-identify Private DICOM Tags
- How-To Configure a Storage
- Interfaces - Devices, DICOM Peers, External Storage
- Locating an External Storage ID
- Manage Site Mode
- Managing Devices
- ORCID Account Configuration
- Overview
- Overview
- Pre-Configured Credentials
- Project Template
- Roles & Permissions Overview
- Session Templates
- Setting Gear Access
- Setting Gear Access Permissions
- Site Bookmarks
- Site Shared Data Views
- Software and Computing Requirements for HPC Client System
- Troubleshooting Authentication
- Using Pre-built Singularity Images (.sif) with HPC
- What is the Unknown Group and Unsorted Project?
- Authentication Commands
- Configuration File
- File Management Commands
- How To Create a Template
- Installation
- The Flywheel Command-Line Interface (CLI)
- The fw ingest Command
- The fw version Command
- Understanding Ingest Templates
- Updating
- Usage and Examples
- BIDS (Brain Imaging Data Structure)
- BIDS Study Design Spreadsheet
- Differences Between the Flywheel and BIDS Hierarchy
- Export a Project in BIDS Format
- Flywheel + BIDS: Getting Started
- Gearify the BIDS app template
- How the BIDS Template Engine Processes Data
- Ignoring Certain Images in Bids
- Importing Existing BIDS Data
- Ingesting Data in BIDS Format using the CLI
- Part 1 - Preparing Data
- Part 2 - Relabeling
- Part 3 - Running the BIDS Curation Gear
- Part 4 - Interpreting the Curation Report
- Part 5 - Field Maps and IntendedFors
- Part 6 - Extending the Curation Template
- The BIDS Template File
- The fw export bids Command
- Update a BIDS app gear
- Webinar: BIDS Templating
- Authentication Commands
- File Management Commands
- Installation
- The Flywheel Command-Line Interface (CLI)
- The fw ingest Command
- The fw version Command
- Tutorial - Import Your First Dataset
- Understanding the CLI
- Updating
- Usage and Examples
- AWS S3 Credentials
- Audit Log
- Authentication Commands
- CLI Troubleshooting Guide
- Cluster Ingest
- Command Cheat Sheet
- Command Comparison
- Configuration File
- De-identify Data with Ingest
- Detecting Duplicate Files with fw ingest
- Export Templates
- File Management Commands
- Finding Logs
- How To Create a Template
- Import DICOM Files (How-To)
- Import Structured Folder (How-To)
- Ingest Structured Folder (Reference)
- Installation
- Login Issues
- Startup Error
- Support for MacOS 10.15 Catalina
- Template Examples
- Template Overview
- Template Reference Guide
- Temporary Storage Location
- The Flywheel Command-Line Interface (CLI)
- The fw deid Command
- The fw export bids Command
- The fw ingest Command
- The fw sync Command
- The fw version Command
- Troubleshooting
- Tutorial - Import Your First Dataset
- Understanding Ingest Templates
- Understanding the CLI
- Updating
- Usage and Examples
- Using the fw ingest template Command
- Video Annotation - Annotating
- Video Annotation - Overview
- Video Annotation - Persisting Annotations in Flywheel
- Video Annotation - Settings
- Annotating Data
- Creating a Viewer Protocol
- Data requirements
- Grant Resources
- Minimum Required DICOM Tags
- OHBM 2020: Automating BIDS Workflow with Flywheel
- OHBM 2020: Automating BIDS Workflow with Flywheel
- OHBM 2020: Data Curation and Machine Learning Presentation
- OHBM 2020: Open Science, Reuse, and Reproducibility
- Revert to the Legacy DICOM/NIfTI Viewer
- Supported SOP Class UID Values
- View and Annotate Images
- Viewer Indexing Errors
- Admin Guide
- DICOM Connector Overview
- Import DICOM Files (How-To)
- Minimum Required DICOM Tags
- Technical Reference
- Tutorial - Import Your First Dataset
- User Guide
- API Access Controls for Devices
- Devices Overview
- Integrating with DIMSE Peer Applications
- Interfaces - Devices, DICOM Peers, External Storage
- Managing Devices
- Create a De-ID Profile
- Create a De-ID Profile
- De-ID Profile Transformation Reference Guide
- De-Identification Overview
- De-Identification Profiles
- Enable a De-ID Profile for a Project, Group, or Site
- How to De-identify Private DICOM Tags
- The fw deid Command
- Create a De-ID Profile
- Create a De-ID Profile
- De-ID Profile Transformation Reference Guide
- De-Identification
- De-Identification Overview
- De-Identification Overview
- De-Identification Profiles
- De-Identify DICOM Files Using the CLI
- De-identify Data with Ingest
- Enable a De-ID Profile for a Project, Group, or Site
- How to De-identify DICOM Files Using the DICOM Uploader
- How to De-identify Private DICOM Tags
- Step 2: De-identify Data
- The fw deid Command
- Differences Between the Flywheel and BIDS Hierarchy
- How the BIDS Template Engine Processes Data
- Part 1 - Preparing Data
- Part 2 - Relabeling
- Part 3 - Running the BIDS Curation Gear
- Part 4 - Interpreting the Curation Report
- Part 5 - Field Maps and IntendedFors
- Part 6 - Extending the Curation Template
- The BIDS Template File
- Flywheel APIs and SDKs
- Flywheel Developer Toolkit
- Flywheel Gears for Developers
- Flywheel Webinar: FlyQL and Advanced Searching in the SDK
- Gear Building Tutorial
- Gear Exchange
- Gear Permissions
- Gear Rules with SDK Gears
- Gear Toolkit
- Introduction to an SDK Gear
- Part 1 - Developing Gears
- Part 2 - Creating Your First Gear
- Part 3 - The Flywheel Environment
- Part 4 - The Run Script
- Part 5 - The Manifest
- Part 6 - The Dockerfile
- Part 7 - Running a Gear Locally
- Part 8 - Logging
- Part 9 - Debugging
- Specifications
- Webinar Series: Finding Material with Python SDK
- Webinar Series: Flywheel SDK to Create Containers
- Webinar Series: Intro to Flywheel Gear Building
- Webinar Series: Intro to the Flywheel SDK
- flywheel-gear-toolkit
- fw-classification
- fw-client
- fw-file
- fw-gear
- Downloaded Files with .MISSING Extension
- Downloading Analysis Outputs Using the Flywheel UI and SDK
- Downloading Data
- Downloading Sessions or Acquisitions from Web UI
- Downloading a File from the Web UI
- Downloading an Entire Project from the Web UI
- Conflict Handling
- Detect Duplicate Files with Ingest (Legacy)
- Detecting Duplicate Files with fw ingest
- Part 1 - Developing Gears
- Part 2 - Creating Your First Gear
- Part 3 - The Flywheel Environment
- Part 4 - The Run Script
- Part 5 - The Manifest
- Part 6 - The Dockerfile
- Part 7 - Running a Gear Locally
- Part 8 - Logging
- Part 9 - Debugging
- Template Examples
- Usage and Examples
- The fw ingest Command
- Understanding Ingest Templates
- Understanding Metadata in Flywheel
- Understanding the CLI
- Bulk Export
- Cancelling
- Downloaded Files with .MISSING Extension
- Downloading Analysis Outputs Using the Flywheel UI and SDK
- Downloading Data
- Downloading Sessions or Acquisitions from Web UI
- Downloading a File from the Web UI
- Downloading an Entire Project from the Web UI
- How to Export Data (CLI)
- How to Export Data (Web App)
- Monitoring
- Scheduling
- Settings
- The fw export bids Command
- Troubleshooting
- Video Annotation - Persisting Annotations in Flywheel
- How-To Configure a Storage
- Interfaces - Devices, DICOM Peers, External Storage
- Locating an External Storage ID
- Overview
- Pre-Configured Credentials
- Gear Rule Processing Details
- Gear Rules
- Prioritizing Jobs and Gear Execution
- Use Gear Rules to Automate Data Preprocessing
- Analysis Gears
- Automated Quality Assurance: MRIQC Gear
- Compute Troubleshooting based on Gear Logs
- Dcm2niix Troubleshooting
- Delete Gears
- Determining the Available GPU Drivers
- Flywheel Gears
- Flywheel Gears for Developers
- Gear Building Tutorial
- Gear Exchange
- Gear Exchange
- Gear Menu Organization
- Gear Permissions
- Gear Rule Templates
- Gear Rules
- Gear Rules with SDK Gears
- Gear Toolkit
- Gear Type and Gear Access
- Gear Versioning
- Including a FreeSurfer License File to Run a FreeSurfer or fMRIPrep Gear
- Introduction to a SDK Gear
- Introduction to an SDK Gear
- Part 1 - Developing Gears
- Part 1 - Preparing Data
- Part 2 - Creating Your First Gear
- Part 2 - Relabeling
- Part 3 - Running the BIDS Curation Gear
- Part 3 - The Flywheel Environment
- Part 4 - Interpreting the Curation Report
- Part 4 - The Run Script
- Part 5 - Field Maps and IntendedFors
- Part 5 - The Manifest
- Part 6 - Extending the Curation Template
- Part 6 - The Dockerfile
- Part 7 - Running a Gear Locally
- Part 8 - Logging
- Part 9 - Debugging
- Preparing Acquisitions for Automated Classification
- Prioritizing Jobs and Gear Execution
- Provenance Tab
- Running Gears as a Batch
- Running a Flywheel Job Locally with Docker
- Running an Analysis Gear on a Subject
- Setting Gear Access
- Setting Gear Access Permissions
- Specifications
- Tag Management
- Types of Gears
- Use Gear Rules to Automate Data Preprocessing
- Using the Jobs Log, Views, Tabs and Actions
- Utility Gears
- Webinar Series: Intro to Flywheel Gear Building
- flywheel-gear-toolkit
- fw-gear
- Add Users
- Adding Institutional Collaborators
- Create a Group and Project
- Create a Project
- De-Identification Overview
- Flywheel + BIDS: Getting Started
- Gear Building Tutorial
- Gear Exchange
- Installation
- ORCID Account Configuration
- Part 1 - Developing Gears
- Part 2 - Creating Your First Gear
- Part 3 - The Flywheel Environment
- Part 4 - The Run Script
- Part 5 - The Manifest
- Part 6 - The Dockerfile
- Part 7 - Running a Gear Locally
- Part 8 - Logging
- Part 9 - Debugging
- Troubleshooting Authentication
- Tutorial - Import Your First Dataset
- Understanding the CLI
- Updating
- Usage and Examples
- Webinar Series: Intro to Flywheel
- Welcome to Flywheel
- De-identify Data with Ingest
- How To Create a Template
- How to Export Data (CLI)
- How to Export Data (Web App)
- How to Import Data (CLI)
- How to Import Data (Web App)
- Installation
- Moving a Session to a Different Project
- Step 1: Create a Template for File Upload
- Step 2: De-identify Data
- Step 3: Adding Additional Settings
- Step 4: Run the Command
- Bulk Import
- Cancelling
- Conflict Handling
- De-Identification
- Getting Data In
- How to Import Data (CLI)
- How to Import Data (Web App)
- Malware Scanning
- Mapping & Grouping (20.5+)
- Mapping Rules (19.4-20.4)
- Monitoring
- Reference-in-Place
- Scheduling
- Troubleshooting
- Tutorial - Import Your First Dataset
- AWS S3 Credentials
- Audit Log
- Cluster Ingest
- De-identify Data with Ingest
- Detect Duplicate Files with Ingest (Legacy)
- Detecting Duplicate Files with fw ingest
- How To Create a Template
- Import DICOM Files (How-To)
- Import Structured Folder (How-To)
- Ingest Structured Folder (Reference)
- Ingest Template - Parameters Reference
- Step 1: Create a Template for File Upload
- Step 2: De-identify Data
- Step 3: Adding Additional Settings
- Step 4: Run the Command
- Template Examples
- Template Overview
- Template Reference Guide
- The fw ingest Command
- Troubleshooting
- Understanding Ingest Templates
- Using the fw ingest template Command
- De-identify Data with Ingest
- How To Create a Template
- Ingest Template - Parameters Reference
- Step 1: Create a Template for File Upload
- Step 2: De-identify Data
- Step 3: Adding Additional Settings
- Step 4: Run the Command
- Template Examples
- Template Overview
- Template Reference Guide
- Understanding Ingest Templates
- Using the fw ingest template Command
- Bulk Export
- Bulk Import
- Downloading Data
- Getting Data In
- The Flywheel Command-Line Interface (CLI)
- The fw ingest Command
- Validated Instance - Overview
- Video Annotation - Overview
- AWS S3 Credentials
- Audit Log
- Authentication Commands
- Cluster Ingest
- Command Cheat Sheet
- Command Comparison
- Export Templates
- File Management Commands
- Ingest Structured Folder (Reference)
- Ingest Template - Parameters Reference
- Settings
- Template Overview
- Template Reference Guide
- The fw deid Command
- The fw export bids Command
- The fw ingest Command
- The fw sync Command
- The fw version Command
- Using the fw ingest template Command
- Downloading Analysis Outputs Using the Flywheel UI and SDK
- Flywheel APIs and SDKs
- Flywheel Webinar: FlyQL and Advanced Searching in the SDK
- Gear Toolkit
- Introduction to a SDK Gear
- Webinar Series: Finding Material with Python SDK
- Webinar Series: Flywheel SDK to Create Containers
- Webinar Series: Intro to the Flywheel SDK
- Basic Search
- Flywheel Webinar: FlyQL and Advanced Searching in the SDK
- Search
- Searching Custom Metadata Fields
- API Access Controls for Devices
- Access Logs
- Add Users
- Adding Institutional Collaborators
- Backing up Data
- Compute Troubleshooting based on Gear Logs
- Create Custom Roles
- Create a Group and Project
- Create a Project
- Creating API Keys
- Delete Gears
- Delete Users
- Devices Overview
- Extension Applications Setup
- Gear Menu Organization
- Gear Permissions
- Gear Rule Templates
- How-To Configure a Storage
- Locating an External Storage ID
- Manage Site Mode
- Managing Devices
- ORCID Account Configuration
- Overview
- Overview
- Pre-Configured Credentials
- Project Template
- Roles & Permissions Overview
- Session Templates
- Setting Gear Access Permissions
- Site Bookmarks
- Site Shared Data Views
- Software and Computing Requirements for HPC Client System
- Troubleshooting Authentication
- Using Pre-built Singularity Images (.sif) with HPC
- What is the Unknown Group and Unsorted Project?
- CLI Troubleshooting Guide
- Compute Troubleshooting based on Gear Logs
- Dcm2niix Troubleshooting
- Determining the Available GPU Drivers
- Finding Logs
- How to Request Gear Compute Changes
- How to Request Gear GPU Compute
- How to Request changes in JupyterLab compute options
- Login Issues
- Startup Error
- Support for MacOS 10.15 Catalina
- Temporary Storage Location
- Troubleshooting
- Troubleshooting
- Troubleshooting
- Unable to Create an Unsorted Project
- Unable to Sign In
- Viewer Indexing Errors
- Gear Building Tutorial
- Part 1 - Preparing Data
- Part 2 - Relabeling
- Part 3 - Running the BIDS Curation Gear
- Part 4 - Interpreting the Curation Report
- Part 5 - Field Maps and IntendedFors
- Part 6 - Extending the Curation Template
- Tutorial - Import Your First Dataset
- Acquisitions
- Adding Attachments
- Advanced Search
- Analysis Gears
- Analysis Tab
- Annotating Data
- Automated Quality Assurance: MRIQC Gear
- BIDS Study Design Spreadsheet
- Basic Search
- Best Practices: File Metadata Importer and File Classifier
- BrainBrowser Info
- Building a MATLAB Gear
- Creating Custom Forms with Form Builder
- Creating and Using Collections
- Custom Metadata - Adding/Editing
- Customer Success Story
- Data Classification
- Data Exchange
- Data Views
- Data Views Available Fields and Technical Specifications
- Dcm2niix Troubleshooting
- De-Identification Overview
- Delete Gears
- Deleting Data
- Deleting Flywheel Data
- Downloaded Files with .MISSING Extension
- Downloading Analysis Outputs Using the Flywheel UI and SDK
- Downloading Sessions or Acquisitions from Web UI
- Downloading a File from the Web UI
- Downloading an Entire Project from the Web UI
- Export a Project in BIDS Format
- File Types in Flywheel
- File Versioning
- Filtering Data
- Find your Flywheel Version
- Finding Data in Flywheel
- Flywheel + BIDS: Getting Started
- Flywheel Gears
- Flywheel HPC-Client: Minimum software and computing requirements
- Flywheel Notebooks User Guide
- Flywheel Webinar: FlyQL and Advanced Searching in the SDK
- Gear Exchange
- Gear Rule Processing Details
- Gear Rules
- Gear Type and Gear Access
- Gear Versioning
- Gearify the BIDS app template
- Ignoring Certain Images in Bids
- Importing Existing BIDS Data
- Including a FreeSurfer License File to Run a FreeSurfer or fMRIPrep Gear
- Installation of Form Builder and Viewer
- Introduction to Read Tasks
- Introduction to a SDK Gear
- Montage Info
- Moving An Acquisition
- Moving Sessions
- Moving a Session to a Different Project
- Obtaining an Error File when Debugging fMRIPrep Failures
- Prioritizing Jobs and Gear Execution
- Project Tab
- Provenance Tab
- Running Gears as a Batch
- Running a Flywheel Job Locally with Docker
- Running an Analysis Gear on a Subject
- Search
- Searching Custom Metadata Fields
- Selecting Data In Flywheel
- Session Tab
- Site Bookmarks
- Site Wide Project Catalog
- Smart Copy
- Storing BIDS Sidecars
- Study Participant Project Report
- Subject Tab
- Subject View
- Tag Management
- Timestamps
- Types of Gears
- Understanding Metadata in Flywheel
- Unzipping dcm.zip in a Downloaded Flywheel Project
- Use Gear Rules to Automate Data Preprocessing
- Using University Credentials to Sign In
- Using the Jobs Log, Views, Tabs and Actions
- Utility Gears
- Validated Instance - Audit Trail
- Validated Instance - Delete Reason
- Validated Instance - MFA Electronic Signature
- Validated Instance - Project Locking
- Viewing BIDS Metadata in Flywheel
- Viewing Your Support Tickets
- Webinar Series: Intro to Flywheel
- Webinar: BIDS Templating
- Webinars
- Validated Instance - Overview
- Video Annotation - Annotating
- Video Annotation - Overview
- Video Annotation - Persisting Annotations in Flywheel
- Video Annotation - Settings
- Add Users
- Adding Institutional Collaborators
- Create Custom Roles
- ORCID Account Configuration
- Troubleshooting Authentication
- Validated Instance - Audit Trail
- Validated Instance - Delete Reason
- Validated Instance - MFA Electronic Signature
- Validated Instance - Overview
- Validated Instance - Project Locking
- Video Annotation - Annotating
- Video Annotation - Overview
- Video Annotation - Persisting Annotations in Flywheel
- Video Annotation - Settings
- Webinar Series: Finding Material with Python SDK
- Webinar Series: Flywheel SDK to Create Containers
- Webinar Series: Intro to Flywheel
- Webinar Series: Intro to Flywheel Gear Building
- Webinar Series: Intro to the Flywheel SDK
- Webinar: BIDS Templating
- Webinars